African Journal of
Biotechnology

  • Abbreviation: Afr. J. Biotechnol.
  • Language: English
  • ISSN: 1684-5315
  • DOI: 10.5897/AJB
  • Start Year: 2002
  • Published Articles: 12500

Full Length Research Paper

Molecular based assessment of genetic diversity of xoconostle accessions (Opuntia spp.)

Ernestina Valadez-Moctezuma
  • Ernestina Valadez-Moctezuma
  • Laboratorio de Biología Molecular, Departamento de Fitotecnia, Universidad Autónoma Chapingo. Carretera México-Texcoco km 38.5 Chapingo Edo. México, CP 56230, México
  • Google Scholar
Quetzely Ortiz-Vásquez
  • Quetzely Ortiz-Vásquez
  • Laboratorio de Biología Molecular, Departamento de Fitotecnia, Universidad Autónoma Chapingo. Carretera México-Texcoco km 38.5 Chapingo Edo. México, CP 56230, México
  • Google Scholar
Samir Samah
  • Samir Samah
  • Laboratorio de Biología Molecular, Departamento de Fitotecnia, Universidad Autónoma Chapingo. Carretera México-Texcoco km 38.5 Chapingo Edo. México, CP 56230, México
  • Google Scholar


  •  Received: 06 October 2013
  •  Accepted: 02 January 2014
  •  Published: 08 January 2014

Abstract

Xoconostle or acidic prickly pear is an important fruit in Mexico; it is produced by a group of Opuntia plants known for their nutritional qualities and adapted to harsh environmental conditions. In this study, we report for the first time the estimation of genetic diversity within a set of 24 xoconostle accessions using inter simple sequence repeats (ISSR) markers. Five ISSR primers were selected to detect DNA polymorphisms in these plants. Broad genetic diversity was detected (0.41-0.82, Dice coefficient) and the unweighted pair group method with the arithmetic averaging (UPGMA) analysis allowed discriminating all genotypes and enabled their clustering into six groups; the ‘Matizado’ accession was significantly divergent from all tested genotypes. In addition, as shown by the clustering analysis and principal component analysis (PCA), the tested genotypes did not group according to their origin, to culture conditions, or to the current species classification. This work, on one hand, demonstrates the high genetic variation among genotypes of xoconostles, and on the other hand, it suggests a taxonomic revision and raises doubts about the number of species reported for these plants.

 

 Key words: Opuntia spp., acidic prickly pear, inter simple sequence repeats (ISSR) markers, taxonomy.

Abbreviation

Abbreviations: ISSR, Inter simple sequence repeats; UPGMA, unweighted pair group method with the arithmetic averaging; PCA, principal component analysis; PIC, polymorphic information content; MI, marker index; Rp, resolving power; PCR, polymerase chain reaction.