African Journal of
Agricultural Research

  • Abbreviation: Afr. J. Agric. Res.
  • Language: English
  • ISSN: 1991-637X
  • DOI: 10.5897/AJAR
  • Start Year: 2006
  • Published Articles: 6712

Full Length Research Paper

Evaluation of the effect of genotype, environment and genotype X environment interaction on white common bean varieties using additive main effect and multiplicative interaction (AMMI) analysis in the mid-altitude of Bale zone, Southeastern Ethiopia

Tadele Tadesse
  • Tadele Tadesse
  • Oromia Agriculture Research Institute, Sinana Agriculture Research Center, Bale-Robe, Ethiopia.
  • Google Scholar
Amanuel Tekalign
  • Amanuel Tekalign
  • Oromia Agriculture Research Institute, Sinana Agriculture Research Center, Bale-Robe, Ethiopia.
  • Google Scholar
Behailu Mulugeta
  • Behailu Mulugeta
  • Oromia Agriculture Research Institute, Sinana Agriculture Research Center, Bale-Robe, Ethiopia.
  • Google Scholar
Gashaw Sefera
  • Gashaw Sefera
  • Oromia Agriculture Research Institute, Sinana Agriculture Research Center, Bale-Robe, Ethiopia.
  • Google Scholar

  •  Received: 24 October 2017
  •  Accepted: 11 December 2017
  •  Published: 15 February 2018


Twelve white common bean genotypes were evaluated along two checks at three diverse locations in the mid-altitude of Bale zone, southeastern Ethiopia for two consecutive years 2014 and 2015 in order to determine their stability. The genotype by environment interaction (GEI) has an influence on the selection and recommendation of cultivars. The objective of this work was to see the effect of GEI and evaluate the adaptability and stability of productivity of twelve white common bean genotypes using additive main effect and multiplicative interaction (AMMI) model.  The combined analysis of variance over locations revealed highly significant differences among the genotypes, locations and genotypes by location interaction. Among the 14 genotypes, the maximum grain yield over locations was obtained by genotype (G5) ICN Bunsi X S X B 405/5C-1C-1C-51 (2.05t/ha) followed by (G11) ICN Bunsi X S X B 405/7C-1C-1C-30 (1.96t/ha), and the site that gave the maximum grain yield was Ginir (2.16t/ha). The results of AMMI analysis indicated that the first four AMMI (AMMI-AMMI4) were highly significant (P<0.01). The GEI - was two times higher than that of the genotype effect, suggesting the possible existence of different environment groups. Based on the stability parameters like AMMI stability value (ASV), G12, G5, G7, G11, G3 and G13 were found to be as stable cultivars, respectively. As stability per se is not a desirable selection criterion and the most stable genotypes would not necessarily give the best yield performance, simultaneous consideration of grain yield and ASV in a single non-parametric index were also considered in identification of best varieties. Based on the Genotype Selection Index (GSI), which considers both the ASV and mean grain yield, genotype G5 and G11 were identified as stable genotypes for the study areas.

Key words: AMMI Stability Value (ASV), Common bean, Genotype Selection Index (GSI), GE interactions




Common bean (P. vulgaris L.) germplasm was introduced into Africa from each of the two gene pools in Latin America during the past four centuries (Allen, 1995). Africa is now the second most important common bean producing region in the tropics, following Latin America (Allen, 1995). Beans are now recognized as the second most important source of human dietary protein, and the third most important source of calories of all agricultural commodities produced in Eastern and Southern Africa (Pachico, 1993). Bean is a major crop in many parts of Africa, especially in eastern Africa. An important food to people of all income categories, it is especially important to the poor as a source of dietary protein. Its production is agronomically diverse, being grown in many different crop associations. Bean is grown primarily by small-scale farmers in eastern Africa. Unfortunately, the rate of increase in bean production has been exceeded by the rate of population growth. The Association for Strengthening Agricultural Research in Eastern and Central Africa (ASARECA) recognizes research on beans as being of high importance. Bean is an important source of cash for small scale farmers in Africa, whether as part of the total farm income or for providing a marketable product at critical times when farmers have nothing else to sell such as before the maize crop is harvested (Pachico, 1993).
Common bean is a well-established component of Ethiopian agriculture, and is regarded as the main cash crop and protein source of the farmers in many lowland and mid-altitude regions of Ethiopia with an estimated production area of 239,000 ha (Wortmann and Allen, 1994). The national average yield is 500 to 700 kg/ha and yield from research station plots is in the range of 2000 to 3000 kg/ha (Mekbib, 1997). The most suitable bean production areas in Ethiopia are characterized by an altitude range of 1200 to 2200 m asl, and mean maximum temperature of less than 32°C, and well distributed rainfall of 350 to 500 mm throughout the growing season. Genotype-environment interactions are of major importance to the plant breeder in developing improved cultivars (Kang, 1993). When cultivars are compared over a series of environments, the rankings usually differ and this may cause difficulty in demonstrating the superiority of any cultivar across environments. Since production is highly affected by the effect of environment, identifying stable cultivar for maximum yield is essential. A major challenge for plant breeders is determining the appropriate common bean genotypes due to genotype x environment (GE) interactions, which determine the differential response of genotypes among environments. To reduce the effects of GE interactions, it is convenient to know their magnitude, and to identify more stable genotypes adapted to specific environments (Cruz and Regazzi, 2007).
In this context, several methods to study adaptability and stability have been used to measure GE interactions in common bean (Coimbra et al., 1999; Carbonell et al., 2004; Ribeiro et al., 2009; Pereira et al., 2009, 2011; Torga et al., 2013), predominantly based on linear regression models (Eberhart and Russell, 1966) and multivariate analyses, such as additive main effects and multiplicative interaction analysis (AMMI) (Gauch, 2006). Traditional methods that predict genotype performances in multiple environments are based on a classic approach to statistics, which estimates one or more parameters from a set of observations. Although there are many stability parameters, Eberhart and Russel (1996) model’s parameters S2di appeared to be very important. Since the variance of S2di is a function of a number of environments, hence several environments with minimum replications per environmental factor being advocated to be necessary to obtain reliable estimates of S2di. To identify the stable genotypes having adaptability over a wide range of agro-climatic conditions is of major significance in crop improvement. Therefore, this study aimed to observe the effect of GEI and to evaluate the adaptability and stability of twelve white common bean genotypes using Additive main effect and multiplicative interaction (AMMI) model.


In this study, 14 white common bean genotypes (Table 1) were evaluated during the main/meher seasons for two consecutive years (2014 to 2015) at three midaltitudes (Ginir, Goro and Dellomena) south eastern of bale zone, Ethiopia. The layout used at all locations was randomized complete block design with four replications. Plot size used was 6.4m2 (4 rows at 40cm spacing and 4m long). The two central rows were used for data collection. Combined analysis of variance least significant difference (LSD) multiple range test were done using Cropstat9 software. The AMMI analysis was performed using the model suggested by Crossa et al. (1991). The stability parameters like regression coefficient (bi), deviation from regression were also calculated using Cropsta9 program. AMMI stability value (ASV), the distance from the coordinate point to the origin in a two dimensional ˆof interaction principal component axes (IPCA) 1 scores against IPCA2 scores was computed by the model suggested by Purchase et al. (2000):
Where,  is the weight given to the IPCA1 value by dividing the IPCA1 sum squares by the IPCA2 sum of squares.
Genotype selection index (GSI) was also calculated by the formula suggested by Farshadfar et al. (2003). Here it is calculated by taking the rank of mean grain yield of genotypes (RYi) across environments and rank of AMMI stability value (RASVi) (Table 1).



The combined analysis of variance revealed significant differences in the yield performance of the varieties were observed among the genotypes, environments and genotype by environment interactions (Table 2). Corte et al. (2002) also reported significant differences for mean grain yield of common bean for environments. Similarly, Raffis et al. (2004), Dar et al. (2009) and Mwale et al. (2009) also reported significant differences in genotypes by environment interaction for mean grain yield of common bean. The variance due to genotypes by environment interaction was found significant for various traits by Singh et al. (2007). Mean comparison for the tested genotypes indicated that maximum grain yield was obtained from G5 (2.05t/ha) followed by G11 (1.96t/ha) and G6 (1.76t/ha) whereas the least mean grain yield was obtained from G8 (1.52t/ha) (Table 2).The regression analysis (Table 3) revealed that the main effects of genotypes, and GE interaction were accounted only for 6.52 and 15.29% of the total sum of square (TSS), respectively (Table 3). Liner GE interaction was not significant and accounted for 5.55% of the variability in the GE interaction. As a general rule, the effectiveness of regression analysis is when 50% of the total sum squares is accounted for by liner GE interaction (Hayward et al.,1993), hence regression analysis is not useful for stability analysis of genotypes (Wade et al., 1995) (Table 3).
The result of AMMI analysis indicated that 6.52% of the total variability was justified by genotypes, 78.17% by environment and 15.29% by genotype. The partitioning of total sum of squares indicated that the environment effect was a predominant source of variation followed by GE and genotype effect. A large sum of square (SS) for environments indicated that the environments were diverse, with large differences among environmental means causing most of the variation in grain yield.  The GE interaction effect was two times higher than that of the genotype effect, suggesting that there were sustainable differences in genotypic response across environments. Furthermore, the AMMI analysis revealed that there were high significant differences for IPCA1, IPCA2, IPCA3 and IPCA4. This made it possible to construct the biplot and calculate genotypes and environment effects (Guach and Zobel, 1996; Yan and Hunt, 2001; Kaya et al., 2002). The first IPCA1 accounted for 35.74% of the variability of GE, followed by IPCA2 (35.43%), IPCA3 (20.63%) and IPCA4 (4.7%).
The first two interaction principal component axes (IPCA) scores were cumulatively accounted for 71.2% of the total GE interaction. This indicates that the use of AMMI model fit the data well and justifies the use of AMMI2 (Table 4). The IPCA scores of a genotype in the AMMI analysis indicate the stability of a genotype across environment. The closer the IPCA scores to zero, the more the stable the genotypes across their testing environments. Table 5 shows effects of genotypes and site values from the additive genotype x environment model. The large differences of effects both on genotypes and on environments were observed. Environments A (0.69t/ha) and C (0.21) have the main high significant positive grain yield effects. Environments E (-0.22t/ha) have the main significant negative grain yield effects. Genotypes G5 (0.34t/ha) and G11 (0.26 t/ha) had a positive grain yield significant effect across all environments. The majority of white common bean varieties had a small none significant main positive effect. Table 6 indicates the different stability parameters that can determine the stability of a given genotype across the tested environment. Accordingly, the regression coefficient (bi), mean grain yield and deviation from regression should be simultaneously seen before deciding on the stability of a genotype. 



Furthermore, the ASV which is the distance from the coordinate point to the origin in a two-dimensional scatter gram of IPCA1 scores against IPCA2 score should also be seen to decide the stability of a genotype (Purchase et al., 2000). In ASV method, the genotype with least ASV score is the most stable. From this study (Table 6), AMMI Stability Value (ASV) distinguished genotypes G12, G5, G7, G13 and G3 as the stable genotypes. However, since the stability in itself should not be the only parameter for selection, as the most stable genotype wouldn’t necessarily give the best yield performance (Mohammadi et al., 2007). Hence, simultaneous consideration of grain yield and ASV in single non-parametric index is needed. Therefore, based on the GSI, G5 and G11 were considered as the most stable genotypes with high grain yield compared to the others (Table 6). The last stage of the AMMI analysis is the graphical representation of genotypes and environment in the biplot (Gabriel, 1971), and identification of mega-environment. The biplot graphics were used to analyze the description of genotypes, environments and the interaction between them. The first singular axis of the AMMI analysis captures the highest percentage of the “pattern” of the data (Gauch and Zobel, 1988).
A high percentage of the Sum Square of the GE interaction (SSGEI) is explained by the first two axes (71.2%) and the highest part of the “pattern” of the GEI will be captured. According to the values of the two first principal components (IPCA1 and IPCA2, Figure 1), G5, G11, G6, G1 and G10 are the genotypes with more productivity in the environmental conditions prevailing during crop development. But G10, interact negatively to most of the environments, though it gives high grain yield above the grand mean. Regarding stability, G5, G11, G12, G13 and G7 are considered as the stable genotypes. However, when we see their GSI (Genotype Selection Index) which associate both the ASV and the grain yield, G5 and G11 are the more stable genotypes with high grain yield across the testing sites. G10 is more specifically adapted to environment E and G9 to environment F (Figure 1).


AMMI analysis of multi-environment yield trials serves two main purposes:
(1) Understanding complex GEI, including delineating mega-environments and selecting genotypes to exploit narrow adaptations, and
(2) Gaining accuracy to improve recommendations, repeatability, selections and genetic gain.
Therefore, according to the present study, genotypes G5, G11 and G12 display higher adaptability and stability. Therefore, they are recommended to be used in all environments included in the study. The genotypes G13 and G7 present high mean productivity. However, they were unstable and specific adaptation to the environments of high quality that is, environment D. Environment A gives the highest mean grain yield (2.395t/ha) and environment B (0.80t/ha) gave the lowest mean grain yield. These can be considered as an example of favorable and unfavorable environments respectively. Therefore, from this study G5 and G11 were considered as the most stable genotypes and therefore, identified as candidate genotypes for possible release.


The authors have not declared any conflict of interests.


Allen DJ (1995). An annotated list of diseases, pathogens and associated fungi of the common bean (Phaseolus vulgaris) in Eastern and Southern Africa. CAB International; Cali, CO: Centro Internacional de Agricultura Tropical (CIAT), Wallingford, GB. 42 p. (Phytopathological paper no. 34).


Carbonell SA, Azevedo Filho JA, Dias LA, Garcia AA, Morais LK (2004). Common bean cultivars and lines interactions with environments. Scientia Agricola. 61(2):169-177.


Coimbra JLM, Carvalho FIF, Hemp S, Silva SA (1999). Adaptability and phenotypic stability of collor bean genotypes (Phaseolus vulgaris L.) in three different environments. Cienc. Rural 29:441-448.


Crossa J, Fox PN, Pfeiffer WH, Rajaram S, Gauch HG 1991. AMMI adjustment for statistical analysis of an interactional wheat yield trial. Theor. Appl. Gent. 81:27-37.


Corte AD, Moda-Cirino V, Destro D (2002). Adaptability and phenotypic stability in early common bean cultivars and lines. Crop Breed. Appl. Biotechnol. 2(4):525-533.


Cruz CD, Regazzi AJ (2007). Modelos biométricos aplicados ao melhoramento genético. Imprensa Universitária, Viçosa.


Dar SA, Pir FA, Manzar A, Lone AA (2009). Studies on genotype x environment interaction and stability for seed yield in common bean (Phaseolus vulgaris L.). Trends Biosci. 2(2):21-22.


Eberhart SA, Russell WA (1966). Stability parameters for comparing varieties. Crop Sci. 6:36-40.


Farshadfar E, Sutka J (2003). Locating QTLs controlling adaptation in wheat using AMMI model. Cereal Res. Commun. 31:249-254.


Gabriel KR (1971). The biplot graphic display of matrices with application to principal component analysis. Biometrika 58:453-467.


Gauch HG, Zobel RW (1988). Predictive and postdictive success of statistical analysis of yield trials. Theoretical Appl. Genet. 76:1-10


Gauch HG, Zobel RW (1996). AMMI analysis of yield trials. In: Kang MS, Gauch HG (eds) Genotype by environment interaction. CRC press Boca Raton FL. pp. 85-122.


Gauch HG (2006). Statistical analysis of yield trials by AMMI and GGE. Crop Sci. 46:1488-1500.


Hayward MD, Besemard NO, Romagosa L (1993). Palnt breeding, Principles and Prospects. 1st edn. Chapman and Hall, London U.K. ISBN: 0-412-43390-7


Kang MS (1993). Simultaneous selection for yield and stability in crop performance trials. Consequence for growers. Agron. J. 85:754-757.


Kaya Y, Palta C, Taner S (2002). Additive main effects and multiplicative interactions analysis of yield performance in bread wheat genotypes across environments. Turk. J. Agric. For. 26:275-279.


Mekbib F (1997). Farmer Participatory common bean (P. vulgaris) genotype evaluation: the case of eastern Ethiopia. Exp. Agric. 33:399-408


Mohammadi R, Haghparast R (2007). Biplot analysis of multi-environment trials for identification of winter wheat mega-environment in Iran. World J. Agric. Sci. 3:475-480.


Mwale VM, Bokosi JM, Masangano CM, Kwapata MB, Kambambe VH, Miles C (2009). Performance of climber common bean (Phaseolus vulgaris L.) lines under Research Design Farm managed (RDFM) system in three bean agro-ecological zones of Marawi. Afr. J. Biotechnol. 8(11):2460-2468.


Pachico D (1993). The demand for bean technology. In: Henry G, ed. Trends in CIAT commodities 1993. CIAT, Cali, Colombia pp. 60-73.


Pereira HS, Melo LC, Faria LC, Peloso MJD (2009). Adaptability and stability of common bean genotypes with carioca grain type for central Brazil. Pesqui. Agropecu. Bras. 44:29-37.


Pereira HS, Melo LC, Del Peloso MJ, Faria LC, Wendland A (2011). Complex interaction between genotypes and growing seasons of carioca common bean in Goiás/Distrito Federal. Crop breeding and applied biotechnology. 11(3):207-215.


Purchase JL, Hatting H, Vandenventer CS (2000). Genotype x environment interaction of winter wheat in south Africa: II. Stability analysis of yield performance . S. Afr. J. Plant Soil 17:101-107.


Raffis SA, Newaz MA, Khan N (2004) Stability analysis for pod and seed production in dry bean (Phaseolus vulgaris L.). Asian J. Plant Sci. 3(2):239-242.


Ribeiro NF, Souza JF, Antunes IF, Poersch NL (2009). Yield stability of common bean cultivars of different commercial groups in Rio Grande do Sul State. Bragantia 68:339-346.


Singh AK, Tomer AK, Tyagi K, Singh PP (2007). Stability analysis for yield and its component in French bean (Phaseolus vulgaris L.) Legume Res. 30(3):166-172.


Torga PP, Melo PGS, Pereira HS, Faria LC (2013). Interaction of common beans cultivars of the black group with years, locations and sowing seasons. Euphytica 189:239-248.


Wade LJ, Sarkarung S, Melran CG, Guhey A, Quader B (1995). Genotype by environment interaction and selection method for identifying improved rainfed lowland rice genotypes. 1st edn. Int. Rice Res. Inst. pp. 883-900.


Wortmann CS, Allen DJ (1994). African bean production environments: their definition, characteristics and constraints. CIAT, Kampala, Uganda. Network on Bean Research in Africa Occasional Publication Series, no. 11.


Yan W, Hunt LA (2001). Interpretation of genotype x environment interaction for winter wheat yield in Ontario. Crop Sci. 41:19-25.