African Journal of
Microbiology Research

  • Abbreviation: Afr. J. Microbiol. Res.
  • Language: English
  • ISSN: 1996-0808
  • DOI: 10.5897/AJMR
  • Start Year: 2007
  • Published Articles: 5233

Full Length Research Paper

Molecular characterization of multiple antibiotic-resistant Pseudomonas aeruginosa isolated from selected hospital fomites and hands of health care workers in Ondo, Nigeria

Olasehinde Deborah Oluwasola
  • Olasehinde Deborah Oluwasola
  • Department of Microbiology, Faculty of Science, Obafemi Awolowo University, Ile-Ife, Nigeria.
  • Google Scholar
Wilkie Eunice Damilola
  • Wilkie Eunice Damilola
  • Department of Microbiology, Adeleke University, Ede, Osun State, Nigeria.
  • Google Scholar
Oluduro Anthonia Olufunke
  • Oluduro Anthonia Olufunke
  • Department of Microbiology, Faculty of Science, Obafemi Awolowo University, Ile-Ife, Nigeria.
  • Google Scholar
Ezeani Chidinma Vivian
  • Ezeani Chidinma Vivian
  • Department of Microbiology, Faculty of Science, Obafemi Awolowo University, Ile-Ife, Nigeria.
  • Google Scholar


  •  Received: 13 December 2021
  •  Accepted: 06 December 2022
  •  Published: 31 January 2023

 ABSTRACT

The study reported the molecular characterization, antibiotic susceptibility profile and the nature of resistance genes in the multiple antibiotic resistant Pseudomonas aeruginosa isolated from selected hospital fomites and hands of health care workers in Ondo, Nigeria. Various fomites and hands of health care workers were swabbed for the detection of Pseudomonas aeruginosa. Each sample was cultured separately on MacConkey and Centrimide agar plates and incubated for 18-24h at 37oC. Pure isolates were obtained using Analytical Profile Index (API) 20E kit. Kirby Bauer’s disc diffusion technique was used to decide the susceptibility of the pure isolates to known antibiotics. Resistant genes to 3 or more antibiotics were determined by Polymerase Chain Reaction (PCR) using appropriate primers. Two hundred Gram-negative bacterial isolates were recovered from 480 swab-stick samples analyzed out of which 54 were Pseudomonas aeruginosa.  All the P. aeruginosa isolates showed total resistance to augmentin, cefixime and cefuroxime meanwhile 30 were resistant to nitrofuratoin, gentamycin 11, ceftazidime 7, ofloxacin 2 and ciprofloxacin 1. 31 (57.4%) were resistant to three or more classes of antibiotics.  Out of the 12 representative isolates, 6 harboured blaCTX-M (585 bp) gene and were not susceptible to beta lactam antibiotics while 4 of the 7 Aminoglycoside (gentamycin) resistant isolates harboured aac-3-iv (286 bp) gene. In conclusion, different hospital fomites might be possible sources of nosocomial infections.

 

Key words: P. aeruginosa, antibiotic-resistance, hospital workers, Ondo, Nigeria.


 INTRODUCTION

Nosocomial infections are hospital acquired infections and its severity is due to the level contamination of the hospital environment and the intrinsic characteristics of the organism. They are due to infections with organisms such as Klebsiella  spp., Shigella  spp.,  Escherichia  coli, Acinetobacter spp., Streptococcus spp., Staphylococcus aureus, Enterococcus spp., Proteus spp., Salmonella spp. and Pseudomonas spp (Moti et al., 2018).

 

A major cause of public health concern is the worldwide dissemination of multi- or extensively drug resistant ‘high risk clones’ of P. aeruginosa, which need urgent attention (Lopez-Causape et al., 2018; Horcajada et al., 2019). The routes of transmission of the pathogen include environmental and patient-to-patient contamination, hands of healthcare workers (after contact with contaminated fomites, and infected patient amongst others. It can also survive on dry fomites from 6 h to 6 month due to its rugged adaptability and survival ability (Pachori et al., 2019; Centre for Disease Control, 2020).

 

An emerging global health threat are infections caused by P. aeruginosa, which are life-threatening because of their mechanisms for survival, adaptation and resistance to multiple antibiotics classes (Moradali et al., 2017). Also, the organism’s pathogenicity is related to the complexity of its genome and various virulence factors (Maurice et al., 2018).

 

Its survival mechanisms include quorum sensing, viable but not culturable state, biofilm formation and antibiotic resistance mechanism (Dey et al., 2019; Verderosa et al., 2019).

 

The ability of P. aeruginosa to colonize a lot of habitats, persistence and prevalence in health care settings and antimicrobial resistance is due to its ability to use diverse responsive mechanisms such as reduced permeability, degrading enzymes, active efflux and modification of the antimicrobial targets (Moradali et al., 2017). It is also innately resistant to a lot of anti-microbials because of its ability to prevent membrane penetration by antimicrobial molecules or to release them if penetration occurs. Some active antimicrobials include: some b-lactams (e.g. ceftolozane-tazobactam, piperacillin tazobactam, ceftazidime-avibactam, ceftazidime, imipenem, meropenem, cefepime and doripenem), fluoroquinolones (e.g. levofloxacin and ciprofloxacin), aminoglycosides (e.g. tobramycin, amikacin and gentamicin) and so on (European Centre for Disease Prevention and Control, 2018).


 MATERIALS AND METHODS

Selection and collection of samples

 

Swab stick samples of fomites and hands of health care workers were collected from Mother and Child Hospital, Ondo and State Specialist Hospital, Ondo, Ondo State, Nigeria after approval of ethical clearance with a reference number (MCHO/06/15/002) by the research committee of the institutions.

 

Identification and characterization of bacterial isolates

 

Fomites samples were collected using sterile swap sticks and were immediately transported to the Laboratory for identification. Samples collected were streaked on Cetrimide agar for the isolation of Pseudomonas aeruginosa

 

Presumptive identification of isolates was done using colony morphology and Gram staining reaction. Pure isolates were furthered identified by biochemical tests, such as catalase, citrate, Methyl Red-Voges Proskaeur, motility and sugar fermentation test (Olutiola et al., 2000).

 

Antibiotic susceptibility test    

 

The P. aeruginosa isolates that were susceptible to commonly used antibiotics were identified using disc diffusion method and the susceptibility test was interpreted following Clinical and Laboratory Standard Institute (CLSI, 2013) guidelines. Discs immersed into concentrations of different antibiotics (gentamycin, augmentin, ceftazidime, nitrofurantoin, ofloxacin, ciprofloxacin, cefixime and cefuroxime (Oxoid Ltd, UK) were carefully inserted on the inoculated Mueller –Hinton agar plate with the aid of sterile forceps and incubated for 18 to 24 h at 37oC. The dimensions of inhibition were taken with a transparent calibrated ruler.

 

Amplication and detection of PCR products

 

Twelve representative multiple antibiotic resistant P. aeruginosa isolates were further examined to detect resistance genes Cefotaximase- Munich (blaCTX-M) and aminoglycoside 3-N-acetyltransferase (aac3-IV) using Polymerase Chain Reaction (PCR). Isolates were selected on the basis of their reaction to antibiotics (Colom et al., 2003; Van et al., 2008).


 RESULTS

Occurrence of Pseudomonas aeruginosa cultured from hospital fomites and hands of health workers in Ondo

 

Table 1 shows the occurrence of P. aeruginosa cultured from hospital fomites and hands of medical personnel. Of the 54 P. aeruginosa isolates cultured, 19 (35%) were cultured from bed, trolley 15 (28%), door handles 5 (9%), wash hand basin 8 (15%), mattress 5 (9%), bed sheet 1 (2%) and health care worker 1 (2%). However, P. aeruginosa was not recovered from other hospital fomites such as incubator, drip stand, cupboard and kidney dish.

 

Antibiotic susceptibility profile of Pseudomonas aeruginosa cultured from hospital   fomites and hands of health care workers in Ondo

 

The antibiotic susceptibility profile of P. aeruginosa to the various antibiotics tested (augmentin, ceftazidime, cefixime, cefuroxime, ciprofloxacin, gentamycin, nitrofuratoin and ofloxacin) is shown in Table 2.

 

Multiple antibiotic resistance patterns of Pseudomonas aeruginosa cultured from hospital fomites in Ondo

 

Multiple antibiotic resistance patterns of P. aeruginosa are represented in Table 3. Multiple antibiotic resistances were defined as resistance to at least 3 or more different classes of antibiotics. The classes of antibiotics used include Beta-lactams (augmentin, cefixime, ceftazidime and cefuroxime), Fluoroquinolones (ciprofloxacin and ofloxacin), Aminoglycosides (gentamycin) and Nitrofurans (nitrofurantoin). Thirty-one (57.4%) of the fifty-four P. aeruginosa isolates obtained in this study showed multiple resistance to at least three different classes of antibiotics. All the thirty one P. aeruginosa exhibited multiple antibiotic resistances, ranging from three to five different classes. The P. aeruginosa isolates exhibited 6 different patterns with “GEN, CXM, AUG” appearing the most frequent.

 

 

Molecular Detection of blaCTX Resistance gene in Pseudomonas aeruginosa

 

Plate 1 shows the agarose gel electrophoresis of bla CTX-M (585 bp) gene in the 12 multiple antibiotic resistant (MAR) P. aeruginosa selected. Six of the beta-lactam antibiotics resistant isolates are depicted by Lanes 3, 4, 5, 7 and 9.

 

Molecular detection of aac-3-iv resistance gene in Pseudomonas aeruginosa

 

Plate 2 presents the MAR P. aeruginosa that harbor aac-3-iv (286 bp) gene. Four of the 7 representative isolates that were resistant to gentamycin antibiotics are depicted by Lanes 3, 4, 5 and 7 harboured aac-3-iv resistance gene of molecular weight of 286 bp.

 


 DISCUSSION

The data obtained from this study revealed that some of the hospital fomites with which body have contact were contaminated with potential pathogens. The recovery of P. aeruginosa  is  an indication of gross contamination which calls for great concern considering the health risks of those that often have body contact with the fomites especially the immunocompromised patients. This is in line with some researchers (Hayden et al., 2006; Carling et al., 2008) who reported various disease causing organisms or nonpathogenic organisms can contaminate different surfaces and medical equipment often used in hospitals. 

Thirty one (57.4%) of the 54 isolates of P. aeruginosa was multiple antibiotics resistant. Resistance was seen in three or more different classes of antibiotics. The trend of decreased antibiotic resistance observed in the study agrees with Lewis et al. (2012); Messadi et al. (2008) and Joseph et al. (2013) who earlier reported decreased resistance of P. aeruginosa to Ceftazidime and Ciprofloxacin but different from Senthamarai (2014), Mohanasundaram (2011) and Ibukun et al. (2007) where high resistance against Ceftazidime in their studies was reported.

 

Antibiotic resistance developed by pathogenic organisms is a global menace and has escalated over the years by the emergence of multi-drug resistant strains among these pathogens (Aslam et al., 2018). Development of resistance to antimicrobial agents by pathogens is a fitness trait acquired to survive in whatever environment they find themselves (Koskella et al., 2011). P. aeruginosa is known to exploit high level of intrinsic and acquired resistance mechanism to bombard quite a lot of antibiotics (Wilkie et al., 2021). A study suggests that the resistance of P. aeruginosa increasesdue to the uncontrolled usage and disposing of antibiotics in the environment. Treatment may fail to recover by constant contact of resistance isolates (Nasreen et al., 2015).

 

This study also revealed the detection of blaCTX-M (585 bp) and aac-3-iv (286 bp) resistance genes in P. aeruginosa isolates cultured from door handles of children and neo-natal wards in Mother and Child hospital and from beddings and trollies of post-natal ward in State Specialist hospital. The detection of blaCTX-M (585 bp) and aac-3-iv (286 bp) resistance genes, account for the resistance observed against beta-lactam group of antibiotics and gentamycin used, respectively. This agrees with Polotto et al. (2012) where blaCTX was detected in P. aeruginosa in his study.

 

Studies have revealed that unlike some exceptions, the CTX-M enzymes have nearly displaced other extended-spectrum Beta lactamase (ESBLs) enzymes in Enterobacteriaceae, including TEM and SHV ESBL variants (Cantón, 2008; Hawkey and Jones, 2009; Rodriguez-Villalobos et al., 2011). This displacement might have occurred not only as a consequence of the extraordinary dissemination of the corresponding blaCTX-M genes in highly mobilizable genetic platforms, including plasmids and transposons, but also because of these platforms within successful clones (Cantón and Coque, 2006; Rogers et al., 2011; Woodford et al., 2011). Another reason for this increase is the co-resistant phenomenon in CTX-M producing organisms, particularly to aminoglycosides and fluoroquinolones, which might facilitate co-selection processes (Morosini et al., 2006; Cantón and Ruiz-Garbajosa, 2011).

 

Apart from this general overview, within the CTX-M enzymes, the CTX-M-15 and CTX-M-14 are by far the most important ones, virtually invading all human and animal compartments as well as the environment all over the world (Cantón, 2008; Hawkey and Jones, 2009; Dolejska et al., 2011; Hiroi et al., 2012). Nevertheless, temporal emergence and penetration of these enzymes in different epidemiological scenarios might also explain the current epidemiology of CTX-M enzymes. Antibiotic consumption and dissimilar risk factors in different geographic areas and groups of patients and particularities of different compartments might have also contributed to the current CTX-M scenario (Carattoli, 2008;  Rodríguez-Baño and Navarro, 2008; Rodríguez-Baño and Pascual, 2008; Oteo et al., 2010a; Naseer and Sundsfjord, 2011). 


 CONCLUSION

This study showed that the different hospital fomites in the study location may be possible sources of nosocomial infections. It also revealed the presence of resistance genes (blaCTX-M, 585 bp and aac-3-iv, 286 bp) in the multiple antibiotic resistant P. aeruginosa isolates which accounted for the multiple antibiotic resistance observed. The susceptibility pattern of P. aeruginosa to ciprofloxacin (97%), ofloxacin (94%) and ceftazidime (71%) in this study showed the effectiveness of these drugs in the treatment of infections caused by P. aeruginosa.


 CONFLICT OF INTERESTS

The authors have not declared any conflict of interests.



 REFERENCES

Aslam B, Wang W, Arshad MI, Khurshid M, Muzammil S, Rasool MH, Nisar MA, Alvi RF, Aslam MA, Qamar MU, Salamat MKF, Baloch Z (2018). Antibiotic resistance: a rundown of a global crisis. Infection and Drug Resistance 11:1645-1658.
Crossref

 

Cantón R, Coque TM (2006). The CTX-M β-lactamase pandemic. Current Opinion in Microbiology 9:466-475.
Crossref

 

Cantón R (2008). Epidemiology and evolution of β-lactamase in Evolutionary Biology of Bacterial and Fungal Pathogens. Washington: American Society of Microbiology Press pp. 249-270.
Crossref

 

Cantón R, Ruiz-Garbajosa P (2011). Co-resistance: an opportunity for the bacteria and resistance genes. Current Opinion in Pharmacology 11(5):477-485.
Crossref

 

Carattoli A (2008). Animal reservoirs for extended spectrum β-lactamase producers. Clinical Microbiology and Infection 14:117-123
Crossref

 

Carling PC, Parry MF, Von Beheren SM, Group HEHS (2008). Identifying opportunities to enhance environmental cleaning in 23 acute care hospitals. Infection Control and Hospital Epidemiology 29(1):1-7.
Crossref

 

Clinical and Laboratory Standards Institute (CLSI) (2013). Performance standards for antimicrobial susceptibility testing. 22nd Informational Supplement 29:M100-S22.

 

Centre for Disease Control (2020). Pseudomonas aeruginosa in healthcare settings. Available at: View

 

Colom K, Pérez J, Alonso R, Fernández-Aranguiz A, Lariño E, Cisterna R (2003). Simple and reliable multiplex PCR assay for detection of blaTEM, bla (SHV) and blaOXA-1 genes in Enterobacteriaceae. Federation of European Microbiology Society Microbiology Letter 223(2):147-151.
Crossref

 

Dey R, Rieger AM, Stephens C, Ashbolt NJ (2019). Interactions of Pseudomonas aeruginosa with Acanthamoeba polyphaga observed by imaging flow cytometry. Cytometry A 95(5):555-564.
Crossref

 

Dolejska M, Frolkova P, Florek M, Jamborova I, Purgertova M, Kutilova I, Cizek A, Guenther S, Literak I (2011). CTX-M-15-producing Escherichia coli clone B2-O25b-ST131 and Klebsiella sp. isolates in municipal wastewater treatment plant effluents. Journal of Antimicrobial Agents and Chemotherapy 66(12):2784-2790.
Crossref

 

Hawkey PM, Jones AM (2009). The changing epidemiology of resistance. Journal of Antimicrobial Chemotherapy 64(1):3-10.
Crossref

 

Hayden MK, Bonten MJM, Blom DW, Lyle EA, Van de Vijver DAMC, Weinstein R (2006). Reduction in acquisition of vancomycin-resistant enterococcus after enforcement of routine environmental cleaning measures. Clinical Infectious Diseases 42(11):1552-1560.
Crossref

 

Hiroi M, Yamazaki F, Harada T, Takahashi N, Iida N, Noda Y, Yagi M, Nishio T, Kanda T, Kawamori F, Sugiyama K, Masuda T, Hara-Kudo Y, Ohashi N (2012). Prevalence of extended-spectrumβ-lactamase-producing Escherichia coli and Klebsiella pneumoniae in food-producing animals. Journal of Veterinary Medical Science 74(2):189-195.
Crossref

 

Horcajada JP, Montero M, Oliver A, Sorl? L, Luque S, Gomez-Zorrilla S (2019). Epidemiology and treatment of multidrug resistant and extensively drug-resistant Pseudomonas aeruginosa infections. Clinical Microbiology Review 32(3):1-19.
Crossref

 

Ibukun A, Tochukwu N, Tolu O (2007). Occurrence of ESBL and MBL in clinical isolates of Pseudomonas aeruginosa from Lagos, Nigeria. Journal of American Science 3(4):81-85.

 

Joseph NM, Devi S, Shashikala P, Kanungo R (2013). Changing Trend in the Antibiotic Resistance Pattern of Pseudomonas Aeruginosa Isolated from Wound Swabs of Out-Patients and in-Patients of a Tertiary Care Hospital. Journal of Clinical and Diagnostic Research 7(10):2170-2172.
Crossref

 

Koskella B, Taylor TB, Bates J, Buckling A (2011). Using experimental evolution to explore natural patterns between bacterial motility and resistance to bacteriophages. The ISME journal 5(11):1809-1817.
Crossref

 

Lewis GJ, Fang X, Gooch M, Cook PP (2012). Decreased resistance of Pseudomonas aeruginosa with restriction of ciprofloxacin in a large teaching hospital's intensive care and intermediate care units. Infectious Control of Hospital Epidemiology 33(4):368-373.
Crossref

 

Lister PD, Wolter DJ, Hansen ND (2009). Antibacterial-Resistant Pseudomonas aeruginosa: Clinical Impact and Complex Regulation of Chromosomally Encoded Resistance Mechanism. Clinical Microbiology Reviews 22(4):582-610.
Crossref

 

Lopez-Causape C, Cabot G, Barrio-Tofin˜o E, Oliver A (2018). The versatile mutational resistome of Pseudomonas aeruginosa. Frontier Microbiology 9:685.
Crossref

 

Maurice NM, Bedi B, Sadikot RT (2018). Pseudomonas aeruginosa biofilms: host response and clinical implications in lung infections. American Journal of Respiratory Cell Molecular Biology 58(4):428-439.
Crossref

 

Messadi AA, Lamia T, Kamel B, Salima O, Monia M, Saida BR (2008). Association between antibiotic use and changes in susceptibility patterns of Pseudomonas aeruginosa in an intensive care burn unit: a 5-year study, 2000-2004. Burns 34(8):1098-1102.
Crossref

 

Mohanasundaram KM (2011). The antimicrobial resistance pattern in the clinical isolates of Pseudomonas aeruginosa in a tertiary care hospital. Journal of Clinical and Diagnostic Research 5(3):491-494.

 

Moradali MF, Ghods S, Rehm BHA (2017). Pseudomonas aeruginosa lifestyle: a paradigm for adaptation, survival, and persistence. Frontiers in Cellular and Infection Microbiology 7:39.
Crossref

 

Morosini MI, García-Castillo M, Coque TM, Valverd A, Novais A, Loza E, Baquero F, Cantón R (2006). Antibiotic co-resistance in extended-spectrum-β-lactamase producing Enterobacteriaceae and in vitro activity of tigecycline. Antimicrobial Agents Chemotherapy 50:2695-2699.
Crossref

 

Moti T, Degu A, Merga D, Dadi M (2018). Bacetrial Nosocomial Infections and Antimicrobial Susceptibility Pattern among Patients Admitted at Hiwot Fana Specialized University Hospital, Eastern Ethiopia. Advances in Medicine 7 p.
Crossref

 

Naseer U, Sundsfjord A (2011). The CTX-M conundrum: dissemination of plasmids and Escherichia coli clones. Microbial Drug Resistance 17: 83-97.
Crossref

 

Nasreen M, Sarker A, Malek MA, Ansaruzzaman M, Rahman M (2015). Prevalence and Resistance Pattern of Pseudomonas aeruginosa Isolated from Surface Water. Advances in Microbiology 5:74-81.
Crossref

 

Olutiola PO, Famurewa O, Sonntag HG (2000). An introduction to microbiology, a practical approach. Tertiary Text Book Series.

 

Oteo J, Pérez-Vázquez M, Campos J (2010a). Extended-spectrum β-lactamase producing Escherichia coli: changing epidemiology and clinical impact. Current Opinions in Infectious Diseases 23:320-326.
Crossref

 

Pachori P, Gothalwal R, Gandhi P (2019). Emergence of antibiotic resistance Pseudomonas aeruginosa in intensive care unit; a critical review. Genes and Diseases 6:109-119.
Crossref

 

Polotto M, Casella T, de Lucca Oliveira MG, Fernando GR, Mauricio LN, Margarete TG de A, Mara CLN (2012). Detection of P. aeruginosa harboring blaCTX-M-2, blaGES-1 and blaGES-5, blaIMP-1 and blaSPM-1 causing infections in Brazilian tertiary-care hospital. BMC Infectious Diseases 12:176.
Crossref

 

Rodríguez-Baño J, Navarro MD (2008). Extended-spectrum β-lactamases in ambulatory care: a clinical perspective. Clinical Microbiology Infection 14:104-110.
Crossref

 

Rodriguez-Villalobos H, Bogaerts P, Berhin C, Bauraing C, Deplano A, Montesinos I, de Mendonça R, Jans B, Glupczynski Y (2011). Trends in production of extended spectrum β-lactamases among Enterobacteriaceae of clinical interest: results of anationwide survey in Belgian hospitals. Journal of Antimicrobial Chemotherapy 66(1):37-47.
Crossref

 

Rogers BA, Sidjabat HE, Paterson DL (2011). Escherichia coli O25b-ST131: a pandemic, multi-resistant, community-associated strain. Journal of Antimicrobial Chemotherapy 66(1):1-14.
Crossref

 

Senthamarai S (2014). "Resistance Pattern of Pseudomonas aeruginosa in a Tertiary Care Hospital of Kanchipuram, Tamilnadu, India. Journal of Clinical and Diagnostic Research 8(5):30-32.
Crossref

 

Van TT, Chin J, Chapman T, Tran LT, Coloe PJ (2008). Safety of raw meat and shellfish in Vietnam: an analysis of Escherichia coli isolations for antibiotic resistance and virulence genes. International Journal of Food Microbiology 124(3):17-223.
Crossref

 

Verderosa AD, Totsika M, Fairfull-Smith KE (2019). Bacterial biofilm eradication agents: a current review. Frontiers in Chemistry 7:824.
Crossref

 

Woodford N, Turton JF, Livermore DM (2011). Multi-resistant Gram-negative bacteria: the role of high-risk clones in the dissemination of antibiotic resistance. Federation of European Materials Societies Microbiology Reviews 35(5):736-755.
Crossref

 




          */?>