African Journal of
Agricultural Research

  • Abbreviation: Afr. J. Agric. Res.
  • Language: English
  • ISSN: 1991-637X
  • DOI: 10.5897/AJAR
  • Start Year: 2006
  • Published Articles: 6714

Full Length Research Paper

Genetic diversity of rice from Iran region assessed by simple sequence repeat (SSR) markers

Mehran Vazirzanjani
  • Mehran Vazirzanjani
  • United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo 183-8509, Japan.
  • Google Scholar
Shinya Kawai
  • Shinya Kawai
  • United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo 183-8509, Japan.
  • Google Scholar
Hossein Mardani Korrani
  • Hossein Mardani Korrani
  • Laboratory of International Biological and Resource Science, Graduate School of Agriculture, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo 183-8509, Japan.
  • Google Scholar
Asma Ossivand
  • Asma Ossivand
  • Laboratory of International Biological and Resource Science, Graduate School of Agriculture, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo 183-8509, Japan.
  • Google Scholar
Taiichiro Ookawa
  • Taiichiro Ookawa
  • United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu, Tokyo 183-8509, Japan.
  • Google Scholar


  •  Received: 29 September 2016
  •  Accepted: 14 June 2017
  •  Published: 07 September 2017

References

Choudhury DR, Singh N, Singh AK, Kumar S, Srinivasan K, Tyagi RK, Ahmad A, Singh NK, Singh R (2014). Analysis of genetic diversity and population structure of rice germplasm from north-aastern region of India and development of a core germplasm set. Plos one 9(11):e113094.
Crossref

 

Ganie SH, Upadhyay P, Das S, Sharma MP (2015). Authentication of medicinal plants by DNA markers. Plant Gene 4:83-99.
Crossref

 
 

Govindaraj M, Vetriventhan M, Srinivasan M (2015). Importance of genetic diversity assessment in crop plants and its recent advances: an overview of its analytical perspectives. Genet. Research Int. 14p.
Crossref

 
 

Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, GuoY, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo K, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B (2012). A map of rice genome variation reveals the origin of cultivated rice. Nature 490:497-503.
Crossref

 
 

Kioko WF, Musyoki MA, Piero NM, Muriira KG, Wavinya ND, Rose L, Felix M, Ngithi NL (2015). Genetic diversity studies on selected rice (Oryza sativa L) populations based on aroma and cooked kernel elongation. J. Phylogen. Evol. Biol. 3:158.
Crossref

 
 

Kumbhar SD, Kulwal PL, Patil JV, Sarawate CD, Gaikwad AP, Jadhav AS (2015). Genetic diversity and population structure in landraces and improved rice varieties from India. Rice Sci. 22(3):99-107.
Crossref

 
 

Mishra KK, Fougat RS, Ballani A, Thakur V, Jha Y, Bora M (2014). Potential and application of molecular markers techniques for plant genome analysis. Int. J. Pure Appl. Biosci. 2(1):169-188.

 
 

Nachimuthu VV, Muthurajan R, DuraialagurajaS, Sivakami R, Pandian BA, Ponniah G. Gunasekarn K, Swaminathan M, Suji KK, Sabariappan R (2015). Analysis of population structure and genetic diversity in rice germplasm using SSR markers: An initiative towards association mapping of agronomic traits in oryza sativa. Rice 8:30.
Crossref

 
 

Nei M (1970). Effective size of human populations. Am. J. Hum. Genet. 22(6):694-696.

 
 

Nei M, Li W (1979). Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. 76(10):5269-5273.
Crossref

 
 

Ren J, Sun D, Chen L, You FM, Wang J, Peng Y, Nevo E, Sun D, Luo MC, Peng J (2013). Genetic diversity revealed by single nucleotide polymorphism markers in a worldwide germplasm collection of durum wheat. Int. J. Mol. Sci. 14:7061-7088.
Crossref

 
 

Salgotra RK, Gupta BB, Bhat JA, Sharma S (2015). Genetic diversity and population structure of Basmati rice (Oryza sativa L.) germplasm collected from north western Himalayas using trait linked SSR markers. Plos one 10(7):e0131858.
Crossref

 
 

Singh N, Choudhury DR, Singh AK, Kumar S, Srinivasan K, Tyagi RK, Singh NK, Singh R (2013). Comparison of SSR and SNP markers in estimation of genetic diversity and population structure of Indian rice varieties. Plosone 8(12):e84136.
Crossref

 
 

Tang W, Wu T, Ye J, Sun J, Jiang Y, Yu J, Tang J, Chen G, Wang C, Wan J (2016). SNP-based analysis of genetic diversity reveals important alleles associated with seed size in rice. BMC Plant Biol. 16:93.
Crossref

 
 

Tidke SA, Kiran S, Harke SN (2014). Analysis of genetic diversity in 20 cotton germplasm lines using random amplified polymorphic DNA marker. Asian J. Plant Sci. 13(4-8):184-189.
Crossref

 
 

Vieira MLC, Santini L, Diniz AL, Munhoz CF (2016). Microsatellite markers: what they mean and why they are so useful. Genet. Mol. Biol. 39(3):312-328.
Crossref