African Journal of
Biotechnology

  • Abbreviation: Afr. J. Biotechnol.
  • Language: English
  • ISSN: 1684-5315
  • DOI: 10.5897/AJB
  • Start Year: 2002
  • Published Articles: 12481

Construction and analysis of a suppression subtractive hybridization (SSH) library of genic multiple-allele inherited male-sterility in Chinese cabbage (Brassica campestris L. ssp. pekinensis)

Ji Rui-Qin1, Xin Xi-Feng1, Li Zi-Qin2 and Feng Hui1*        
1Department of Horticulture, Shenyang Agricultural University, Shenyang 110866, China. 2Inner Mongolia Academy of Agricultural and Animal Husbandry Sciences, Hohhot 010031, China.  
Email: [email protected]

  •  Accepted: 04 March 2011
  •  Published: 15 June 2011

Abstract

Utilization of male sterility is a key method for producing crossbred Chinese cabbage (Brassica rapa L. ssp. pekinensis (Lour.) Olsson. In this study, suppression subtractive hybridization (SSH) was used to construct sterility and fertility cDNA libraries, which included differentially, expressed clones between fertile and sterile buds of the A/B line ‘AB01’. The positive clones were randomly selected bypolymerase chain reaction amplification (PCR) and 25 high quality sequences (22 from the fertile-tester library and three from the sterile-tester libraries) were generated. The fragment lengths varied from 77 to 469 bp. Differential expression patterns between fertile and sterile buds were selected and verified using five expressed sequence tags (ESTs). Results indicated that, three ESTs were expressed only in fertile buds and two ESTs were down-regulated in sterile buds. According to the Basic Local Alignment Search Tool (BLAST) screening and functional annotation, the 25 ESTs were homologous to known sequences deposited in National Center for Biotechnology Information (NCBI). These genes had homology to known proteins such as flowers/buds development proteins, metabolic-related proteins, cell structure proteins, cell growth/division proteins and secondary metabolic-related proteins. The results suggested that, these proteins played a critical role in nuclear male sterility progression of genic multiple-allele inherited male-sterility in Chinese cabbage.

 

Key words: Key words: Chinese cabbage, male sterility, suppression subtractive hybridization (SSH), expressed sequence tags (ESTs).

Abbreviation

GMS, Genic male sterility; CMS, cytoplasmic male sterility; AFLP,amplified fragment length polymorphism; DDRT-PCR, differential display reverse transcriptase polymerase chain reaction; SSH, suppression subtractive hybridization;RDA, representational difference analysis; DGMS, dominant genic male sterility;BLAST, Basic Local Alignment Search ToolESTs, expressed sequence tags; RT,reverse transcription; PCD, programmed cell death; ROS, reaction oxygen species.