African Journal of
Biotechnology

  • Abbreviation: Afr. J. Biotechnol.
  • Language: English
  • ISSN: 1684-5315
  • DOI: 10.5897/AJB
  • Start Year: 2002
  • Published Articles: 12488

Full Length Research Paper

Identification and genetic diversity of Jordanian potato soft rot isolates, Pectobacterium carotovorum subspecies carotovorum (DYE 1969)

Ibtihal Abu-Obeid
  • Ibtihal Abu-Obeid
  • Plant Protection Directorate, National Agricultural Research Center (NARC), Jordan.
  • Google Scholar
Hamed Khlaif
  • Hamed Khlaif
  • Plant Protection Department, Faculty of Agriculture, the University of Jordan, Jordan.
  • Google Scholar
Nida Salem
  • Nida Salem
  • Plant Protection Department, Faculty of Agriculture, the University of Jordan, Jordan.
  • Google Scholar


  •  Received: 02 May 2018
  •  Accepted: 05 June 2018
  •  Published: 13 June 2018

References

Anonymous (2016). The Hashemite Kingdom of Jordan. Ministry of Agriculture Statistical Year Book.

 

Abu-Obeid I, Khlaif H, Salem N (2018). Comparison of Different Sets of Primers Used in Detection and Identification of Potato Soft Rot Pectobacterium carotovorum subsp. carotovorum (DYE1969). Asian Journal of Research in Crop Science 1(1):1-12.

 

Azadmanesh S, Marefat A, Azadmanesh K (2013). Detection of Pectobacteria causal agents of potato soft rot in north western provinces of Iran (Electronic Version). Journal of Plant Pathology and Microbiology 4:1.

 

Czajkowski R, Grzegorz G, van der Wolf J (2009). Distribution of Dickeya spp. and Pectobacterium carotovorum ssp. carotovorum in naturally infected seed potatoes. European Journal of Plant Pathology 125:263-275.
Crossref

 

Czajkowski R, Perombelon M, Jafra S, Lojkowaska E, Prtrykus M. van der Wolf J, Sledz W (2014), Detection, identification and differentiation of Pectobacterium and Dickeya species causing potato black leg and tuber soft rot: a review. Annals of Applied Biology 166: 18-28.
Crossref

 

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Crossref

 

Kang H, Knwon S, Go S (2003). PCR-based specific and sensitive detection of Pectobacterium carotovorum ssp. carotovorum by primers generated from URP-PCR finger printing-derived polymorphic band. Plant Pathology 52:127-133.
Crossref

 

Kettani-Halabi M, Tera T, Amdan M, El Fahime E, Bouteau F, Mustapha M (2013). An easy, simple inexpensive test for the specific detection of Pectobacterium carotovorum ssp. carotovorum based on sequence analysis of the pmrA gene. BMC Microbiology 13:176-182.
Crossref

 

Kumar S, Tamura K, Jakobsen IB, Nei M (2001). MEGA2: Molecular evolutionary genetics analysis software. Bioinformatics Applied Note 17:1244-1245.
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Palacio-Bielsa A, Cambra M, Lopez M (2009). PCR detection and identification of plant pathogenic bacteria: updated review of protocols (1989-2007). Journal of Plant Pathology 91(2):249-297.

 

Perombelon M (2002). Potato diseases caused by soft rot erwinias: an overview of pathogenesis. Plant Pathology 51:1-12.
Crossref

 

Rahmanifer B, Hassnzadeh N, Razmi J, Ghasemi A (2012). Genetic diversity of Iranian potato soft rot bacteria based on polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analysis. African Journal of Biotechnology 11(6):1314-1320.

 

Rajeh O, Khlaif H (2000). Soft rot disease of vegetables in Jordan: host range, reaction of some potato cultivars to the identification and effect of planting date. Dirasat, Agricultural Sciences 27(2):149-157.

 

Schaad N, Jones J, Chun W (2005), Laboratory Guide for Identification of Plant Pathogenic Bacteria (3rd ed.), Minnesota: APS, St. Paul.

 

Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997). The CLUSTALX windows interface; flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25:4876-4882.
Crossref

 

Toth I, Avrova A, Hyman L (2001). Rapid identification and differentiation of the soft rot Erwinias by 16S-23S intergenic transcribed spacer-PCR and Restriction Fragment Length Polymorphism Analyses. Applied Environmental Microbiology 67:4070-4076.
Crossref

 

Terrta M, Azelmat S, M'hand R, Achbani E, Barakate M, Bouteau F, Ennaji M (2011). Molecular typing of Pectobacterium carotovorum isolated from potato tuber soft rot in Morocco. Annals Microbiology 47:1411-1417.

 

Zhu I, Xie H, Chen S, Ma R (2010), Rapid isolation, identification and phylogenetic analysis of Pectobacterium carotovorum ssp. Journal of Plant Pathology 92(2):479-483.