African Journal of
Biotechnology

  • Abbreviation: Afr. J. Biotechnol.
  • Language: English
  • ISSN: 1684-5315
  • DOI: 10.5897/AJB
  • Start Year: 2002
  • Published Articles: 12487

Full Length Research Paper

Identifying salt stress-responsive transcripts from Roselle (Hibiscus sabdariffa L.) roots by differential display

Bahaeldeen Babiker MOHAMED*
  • Bahaeldeen Babiker MOHAMED*
  • National Centre for Research (NCR) Ministry of Sciences and Telecommunications Khartoum, Sudan.
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Muhammad Naveed SHAHID
  • Muhammad Naveed SHAHID
  • Centre for Excellence in Molecular Biology, University of the Punjab, 87 Canal Bank Road, Thokar Niaz Baig 53700 Lahore, Pakistan.
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Bushra RASHID
  • Bushra RASHID
  • Centre for Excellence in Molecular Biology, University of the Punjab, 87 Canal Bank Road, Thokar Niaz Baig 53700 Lahore, Pakistan.
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Adil JAMAL
  • Adil JAMAL
  • Centre for Excellence in Molecular Biology, University of the Punjab, 87 Canal Bank Road, Thokar Niaz Baig 53700 Lahore, Pakistan.
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Beenish AFTAB
  • Beenish AFTAB
  • Centre for Excellence in Molecular Biology, University of the Punjab, 87 Canal Bank Road, Thokar Niaz Baig 53700 Lahore, Pakistan.
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Abdelhafiz Adam DAHAB
  • Abdelhafiz Adam DAHAB
  • Centre for Excellence in Molecular Biology, University of the Punjab, 87 Canal Bank Road, Thokar Niaz Baig 53700 Lahore, Pakistan.
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Sarfraz KIANI
  • Sarfraz KIANI
  • Centre for Excellence in Molecular Biology, University of the Punjab, 87 Canal Bank Road, Thokar Niaz Baig 53700 Lahore, Pakistan.
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Muhammad Aleem ASHRAF
  • Muhammad Aleem ASHRAF
  • Centre for Excellence in Molecular Biology, University of the Punjab, 87 Canal Bank Road, Thokar Niaz Baig 53700 Lahore, Pakistan.
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Sameera HASSAN
  • Sameera HASSAN
  • Centre for Excellence in Molecular Biology, University of the Punjab, 87 Canal Bank Road, Thokar Niaz Baig 53700 Lahore, Pakistan.
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Tayyab HUSNAIN
  • Tayyab HUSNAIN
  • Centre for Excellence in Molecular Biology, University of the Punjab, 87 Canal Bank Road, Thokar Niaz Baig 53700 Lahore, Pakistan.
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Muhammad Bilal SARWAR
  • Muhammad Bilal SARWAR
  • Centre for Excellence in Molecular Biology, University of the Punjab, 87 Canal Bank Road, Thokar Niaz Baig 53700 Lahore, Pakistan.
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  •  Received: 27 May 2014
  •  Accepted: 27 October 2014
  •  Published: 31 December 2014

Abstract

No previous study has been reported on the salt-modulated gene(s) of roselle (Hibiscus sabdariffa L.). Identifying the potentially novel transcripts responsible for salt stress tolerance in roselle will increase knowledge of the molecular mechanism underlying salt stress responses. In this study, differential display reverse transcriptase PCR (DDRT-PCR) was used to compare the overall differences in gene expression between salt-stressed and control plants. A total of 81 primer combinations were used and false positive clones were rejected during a screening and quality control assay. The remaining nine cDNA transcript fragments were extracted from the gel, reamplified, cloned and sequenced. A homology search revealed that four transcripts showed significant homology with known genes. Out of five transcripts, real-time PCR demonstrated that four exhibited high expression in salt-stressed root tissues relative to the control and one transcript was down-regulated. These transcripts may be useful for improving tolerance in salt stress-sensitive plants.
 
Key words: Roselle, Hibiscus Sabdariffa L., differential display, salt-stress, differentially expressed transcripts, signal transduction.