Full Length Research Paper
References
|
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997).Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402. Crossref |
||||
|
Batada NN, Hurst LD, Tyers M (2006). Evolutionary and physiological importance of hub proteins. Plos Comput. Biol. 2(7): e88. Crossref |
||||
|
Bruce C, Clegg C, Featherstone A, Smith J, Oram J (1993). Sequence analysis of the gp120 region of the env gene of Ugandan human immunodeficiency proviruses from a single individual. AIDS Res. Hum. Retrovir. 9 (4):357-363. Crossref |
||||
|
Chou PY, Fasman GD (1978) Prediction of the secondary structure of proteins from their amino acid sequence. Adv. Enzymol. Relat. Areas Mol. Biol. 47:45-148. PMid:364941 |
||||
|
Emini EA, Hughes JV, Perlow DS, Boger J (1985). Induction of hepatitis A virus-neutralizing antibody by a virus-specific synthetic peptide. J Virol. 55(3):836-839. Pubmed |
||||
|
Fraser HB, Hirsh AE, Steinmetz LM, Scharfe C, Feldman MW (2002). Evolutionary Rate in the Protein Interaction Network. Science 296:750-752 Crossref |
||||
|
Geer LY, Domrachev M, Lipman DJ, Bryant SH (2002). CDART: protein homology by domain architecture. Genome Res. 12(10):1619-623. Crossref |
||||
|
Haste Andersen P, Nielsen M, Lund O (2006). Prediction of B-cell epitopes using protein 3D structures. Protein Sci. 15(11): 2558-2567. Crossref |
||||
|
Huang J, Honda W (2006). CED: a conformational epitope database. BMC Immunol. 7: 7 Crossref |
||||
|
Karplus PA, Schulz GE (1985). Prediction of Chain Flexibility in Proteins - A tool for the Selection of Peptide Antigens. Naturwissenschafren. 72: 212-213. Crossref |
||||
|
Kolaskar AS, Tongaonkar PC (1990). A semi-empirical method for prediction of antigenic determinants on protein antigens. FEBS Lett. 276(1-2):172-174. Crossref |
||||
|
Korber B, LaBute M, Yusim K (2006). Immunoinformatics comes of age. PLoS Comput Biol. 2(6): e71. Crossref |
||||
|
Labrosse B, Morand-Joubert L, Goubard A, Rochas S, Labernardière JL, Pacanowski J, Meynard JL, Hance AJ, Clavel F, Mammano F(2006). Role of the envelope genetic context in the development of enfuvirtide resistance in human immunodeficiency virus type 1-infected patients. J. Virol. 80(17):8807-8819. Crossref |
||||
|
Larsen JE, Lund O, Nielsen M (2006). Improved method for predicting linear B-cell epitopes. Immunome Res. 2:2. Crossref |
||||
|
Liu Y, Woodward A, Zhu H, Andrus T, McNevin J, Lee J, Mullins JI, Corey L, McElrath MJ, Zhu T (2009). Preinfection human immunodeficiency virus (HIV)-specific cytotoxic T lymphocytes failed to prevent HIV type 1 infection from strains genetically unrelated to viruses in long-term exposed partners. J. Virol. 83 (20): 10821-10829. Crossref |
||||
|
Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Lu F, Marchler GH, Mullokandov M, Omelchenko MV, Robertson CL, Song JS, Thanki N, Yamashita RA, Zhang D, Zhang N, Zheng C, Bryant SH(2011). CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res. 39(Database issue): D225-229. Crossref |
||||
|
Parker JM, Guo D, Hodges RS (1986). New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sites. Biochemistry 25(19): 5425-5432. Crossref |
||||
|
Sanchez A, Kiley MP, Holloway BP, Auperin DD (1993). Sequence analysis of the Ebola virus genome: organization, genetic elements, and comparison with the genome of Marburg virus. Virus Res. 29: 215-240. Crossref |
||||
|
Sanchez A, Lukwiya M, Bausch D, Mahanty S, Sanchez AJ, Wagoner KD, Rollin PE (2004). Analysis of human peripheral blood samples from fatal and nonfatal cases of Ebola (Sudan) hemorrhagic fever: cellular responses, virus load, and nitric oxide levels. J. Virol. 78: 10370-10377. Crossref |
||||
|
Sanchez A, Trappier SG, Mahy BW, Peters CJ, Nichol ST (1996). The virion glycoproteins of Ebola viruses are encoded in two reading frames and are expressed through transcriptional editing. Proc. Natl. Acad. Sci. U.S.A. 93:3602-3607. Crossref |
||||
|
Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, Li W, Lopez R, McWilliam H, Remmert M, Söding J, Thompson JD, Higgins DG (2011). Fast, scalable generation of high-quality protein multiple sequence alignments using clustal omega. Mol. Syst. Biol. 7:539. Crossref |
||||
| Zhang Q, Wang P, Kim Y, Haste-Andersen P, Beaver J, Bourne PE, Bui HH, Buus S, Frankild S, Greenbaum J, Lund O, Lundegaard C, Nielsen M, Ponomarenko J, Sette A, Zhu Z, Peters B (2008). Immune epitope database analysis resource (IEDB-AR). Nucleic Acids Res. 36(Web Server issue):W513-518. | ||||
Copyright © 2024 Author(s) retain the copyright of this article.
This article is published under the terms of the Creative Commons Attribution License 4.0
