African Journal of
Biotechnology

  • Abbreviation: Afr. J. Biotechnol.
  • Language: English
  • ISSN: 1684-5315
  • DOI: 10.5897/AJB
  • Start Year: 2002
  • Published Articles: 12486

Full Length Research Paper

Next generation sequencing as a method to verify virus elimination using heat treatment and meristem tip culture in the five most widely used sweet potato varieties in Ethiopia

Dereje H. Buko
  • Dereje H. Buko
  • Department of Plant Sciences, Norwegian University of Life Sciences (NMBU), P. O. Box 5003, 1432 Ã…s, Norway.
  • Google Scholar
Carl Spetz
  • Carl Spetz
  • School of Plant and Horticultural Sciences, Hawassa University (HwU), P. O. Box 05 Hawassa, Ethiopia.
  • Google Scholar
A. K. Hvoslef-Eide
  • A. K. Hvoslef-Eide
  • Department of Plant Sciences, Norwegian University of Life Sciences (NMBU), P. O. Box 5003, 1432 Ã…s, Norway.
  • Google Scholar


  •  Received: 22 May 2020
  •  Accepted: 06 July 2020
  •  Published: 31 July 2020

References

Bhat AI, Hohn T, Selvarajan R (2016). Badnaviruses: The current global scenario. Viruses 8(6):177.
Crossref

 

Bömer M, Rathnayake AI, Visendi P, Silva G, Seal SE (2018). Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology 163(2):533-538.
Crossref

 
 

Dennien S, Homare D, Hughes M, Lovatt J, Coleman E, Jackson G (2013). Growing healthy sweet potato: Best practices for producing planting material. ACIAR. 

View

 
 

Dereje HB, Hvoslef-Eide AK (2020). Optimization of plant growth regulators for meristem initiation and subsequent multiplication of five virus tested elite sweet potato varieties from Ethiopia. African Journal of Biotechnology 19(6):332-343.
Crossref

 
 

FAO (2017). FAOSTAT database food and agricultural commodities production/commodities by country, Ethiopia. Food and Agriculture Organization of the United Nations, Rome. [accessed 2018 05, 30]. 

View

 
 

Gayral P, Blondin L, Guidolin O, Carreel F, Hippolyte I, Perrier X, Iskra-Caruana M-L (2010). Evolution of endogenous sequences of banana streak virus: What can we learn from banana (Musa sp.) Evolution? Journal of Virology 84(14):7346-7359.
Crossref

 
 

Jones S, Baizan-Edge A, MacFarlane S, Torrance L (2017). Viral diagnostics in plants using next generation sequencing: Computational analysis in practice. Frontiers in Plant Science 8:1770.
Crossref

 
 

Kathurima T, Bett B, Miano D, Kim D (2011). Diagnostics of viruses infecting local farmer preferred sweet potato cultivars in Kenya. African Journal of Agricultural Research 6(16):3718-3724.

 
 

Kashif M, Pietilä S, Artola K, Jones R, Tugume A, Mäkinen V, Valkonen J (2012). Detection of viruses in sweetpotato from Honduras and Guatemala augmented by deep-sequencing of small-RNAs. Plant Disease 96(10):1430-1437.
Crossref

 
 

Kreuze J, Perez A, Galvez M, Cuellar WJ (2017). Badnaviruses of sweetpotato: Symptomless co-inhabitants on a global scale. bioRxiv: 140517.
Crossref

 
 

Kreuze JF, Perez A, Untiveros M, Quispe D, Fuentes S, Barker I, Simon R (2009). Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses. Virology 388(1):1-7.
Crossref

 
 

Kwak H-R, Kim M-K, Shin J-C, Lee Y-J, Seo J-K, Lee H-U, Jung M-N, Kim S-H, Choi H-S (2014). The current incidence of viral disease in Korean sweet potatoes and development of multiplex RT-PCR assays for simultaneous detection of eight sweet potato viruses. Plant Pathology Journal 30(4):416.
Crossref

 
 

Li F, Zuo R, Abad J, Xu D, Bao G, Li R (2012). Simultaneous detection and differentiation of four closely related sweet potato potyviruses by a multiplex one-step RT-PCR. Journal of Virological Methods 186(1-2):161-166.
Crossref

 
 

Maliogka VI, Minafra A, Saldarelli P, Ruiz-García AB, Glasa M, Katis N, Olmos A (2018). Recent advances on detection and characterization of fruit tree viruses using high-throughput sequencing technologies. Viruses 10(8):436.
Crossref

 
 

Mbanzibwa D, Tugume A, Chiunga E, Mark D, Tairo F (2014). Small RNA deep sequencing‐based detection and further evidence of DNA viruses infecting sweetpotato plants in Tanzania. Annals of Applied Biology 165(3): 329-339.
Crossref

 
 

Nhlapo T, Mulabisana J, Odeny D, Rey M, Rees D (2018). First Report of Sweet potato badnavirus A and Sweet potato badnavirus B in South Africa. Plant Disease 102(9):1865-1865.
Crossref

 
 

Tesfaye T, Feyissa T, Abraham A (2011). Survey and serological detection of sweet potato (Ipomoea batatas (L.) Lam) viruses in Ethiopia. Journal of Applied Biosciences 41:2746-2756.

 
 

Tesfaye T, Fikre H, Gemu M (2013). Prevalence, incidence and distribution of sweet potato vrus: Its effect on the yield of sweet potato in southern Region of Ethiopia. International Journal of Science and Research 2(1):591-595.

 
 

Wang Y-J, Zhang D-S, Zhang Z-C, Wang S, Qiao Q, Qin Y-H, Tian Y-T (2015). First report on sweetpotato symptomless virus 1 (genus Mastrevirus, family Geminiviridae) in sweetpotato in China. Plant Disease 99(7):1042-1042.
Crossref

 
 

Zheng Y, Gao S, Padmanabhan C, Li R, Galvez M, Gutierrez D, Fuentes S, Ling K-S, Kreuze J, Fei Z (2017). VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs. Virology 500:130-138.
Crossref